reclassToBats {birdscanR}

integrate bat classification

Description

reclassifies echoes based on bat classification

Usage

reclassToBats(
  echoData = NULL,
  batClassProbabilitiesAndMtrFactors = NULL,
  reclassToBatCutoff = -1
)

Arguments

echoData

echodata dataframe, output from extractDbData

batClassProbabilitiesAndMtrFactors

probabilities of bat classification, output from extractDbData'

reclassToBatCutoff

Threshold (0..1), classification of echoes with bat probability higher than reclassToBatCutoff will be set to 'bat'

Value

echoData dataframe

Author(s)

Fabian Hertner, [e-mail]

Examples

## Not run: 
# Set server, database, and other input settings
# ===========================================================================
  dbServer       = "MACHINE\\SERVERNAME"     # Set the name of your SQL server
  dbName         = "db_Name"                   # Set the name of your database
  dbDriverChar   = "SQL Server"                # Set either "SQL Server" or "PostgreSQL"
  mainOutputDir  = file.path(".", "results")
  radarTimeZone  = "Etc/GMT0"
  targetTimeZone = "Etc/GMT0"
  listOfRfFeaturesToExtract = c(167, 168)
  siteLocation   = c(47.494427, 8.716432)
  sunOrCivil   = "civil"
 
# Get data
# ===========================================================================
  dbData = extractDbData(dbDriverChar                   = dbDriverChar,
                         dbServer                       = dbServer, 
                         dbName                         = dbName, 
                         saveDbToFile                   = TRUE,
                         dbDataDir                      = mainOutputDir,
                         radarTimeZone                  = radarTimeZone,
                         targetTimeZone                 = targetTimeZone,
                         listOfRfFeaturesToExtract      = listOfRfFeaturesToExtract,
                         siteLocation                   = siteLocation, 
                         sunOrCivil                   = sunOrCivil,
                         crepuscule                     = "nauticalSolar")
#' 
# Reclass To Bats
# ===========================================================================
  dbData$echoData = reclassToBats(echoData = dbData$echoData,
                                  batClassProbabilitiesAndMtrFactors = 
                                      dbData$batClassProbabilitiesAndMtrFactors,
                                  reclassToBatCutoff = 0.5)

## End(Not run)