load.revised.otu {bio.infer}

Loads a user-revised OTU table

Description

If manual correction of the OTU selections is desired, these corrections should be made on the "sum.otu.txt" file provided by get.otu. The corrections should be saved as tab-delimited text, and then load.revised.otu run.

Usage

load.revised.otu(bcnt.otu, otufname = "sum.otu.txt")

Arguments

bcnt.otu

Original benthic count file with OTU designations. Output from get.otu

otufname

File name of revised OTU assignments.

Details

The benthic count data frame is assumed to be the original output from get.otu, and therefore has a field called TNAME.

Value

The script returns a new benthic count file that incorporates the corrections to the OTU table.

Author(s)

Lester L. Yuan

See Also

get.otu