plotclust {biclust}

Barplot of Bicluster

Description

Draws a graph to compare the values inside the diffrent biclusters with the values outside the bicluster

Usage

plotclust(res,x,bicluster=TRUE,legende=FALSE,noC=5,wyld=3,Titel="Plotclust",...)

Arguments

x

The data matrix

res

BiclustResult object if bicluster=TRUE else a normal kcca object.

bicluster

If TRUE,res is treated as a BiclustResult object

legende

Draws a legend.

noC

Number of Clusters drawn

wyld

Gives the distance between plot and axis.

Titel

Gives the title of the plot.

...

Additional plot options

Author(s)

Sebastian Kaiser [e-mail]

See Also

bubbleplot for simultaneous representation of biclusters. parallelCoordinatesfor single representation of biclusters as lines of gene or condition profiles. drawHeatmapfor Heatmap representation of biclusters.

Examples

  s2=matrix(rnorm(400),20,20)
  s2[12:16,12:16]=rnorm(25,3,0.3)
  set.seed(1)
  bics <- biclust(s2,BCPlaid(), back.fit = 2, shuffle = 3, fit.model = ~m + a + b,
  iter.startup = 5, iter.layer = 30,  verbose = TRUE)
  plotclust(bics,s2)