biclustmember {biclust} R Documentation

## Bicluster Membership Graph

### Description

Draws a membership graph cluster x columns

### Usage

biclustmember(bicResult, x, mid = T, cl_label = "", which=NA,
main = "BiCluster Membership Graph", xlab="Cluster",
color=diverge_hcl(101, h = c(0, 130)), ...)

clustmember(res, x, mid = T, cl_label = "", which=NA,
main = "Cluster Membership Graph", xlab="Cluster",
color=diverge_hcl(101, h = c(0, 130)), ...)

bicorder(bicResult, cols=TRUE, rev=FALSE)


### Arguments

 x The data matrix bicResult BiclustResult object with a bicluster result set. res Cluster Result (is converted into a kcca object) mid If TRUE, shows the value of the remaining objects inside the cluster value, else shows both aside each other. cl_label Ticks of x-axis which If specified gives the ploting order of the columns from bottom to top main Gives the title of the plot xlab Label of x-axis color Range of colors for the plot ... Additional plot options or if neccessary option for as.kcca cols If TRUE orders the column by appearance in the bicluster, else orders the rows. rev If TRUE reverses the order

### Author(s)

Sebastian Kaiser sebastian.kaiser@stat.uni-muenchen.de

bubbleplot for simultaneous representation of biclusters, parallelCoordinatesfor single representation of biclusters as lines of gene or condition profiles, drawHeatmapfor Heatmap representation of biclusters and biclustbarchart for a barchart.

### Examples

  set.seed(1)
x=matrix(rnorm(900),30,30)
x[1:5,1:5]=rnorm(25,3,0.3)
x[11:15,11:15]=rnorm(25,-3,0.3)
x[21:25,21:25]=rnorm(25,6,0.3)
colnames(x)<-paste("Var.",1:30)
bics <- biclust(x,BCPlaid(), back.fit = 2, shuffle = 3, fit.model = ~m + a + b,
iter.startup = 5, iter.layer = 30,  verbose = TRUE)

biclustmember(bics,x)

ord<-bicorder(bics, cols=TRUE, rev=TRUE)

biclustmember(bics,x,which=ord)



[Package biclust version 2.0.3.1 Index]