| legacy.data {betaclust} | R Documentation |
MethylationEPIC manifest data.
Description
A dataset containing a subset of the manifest data from the Illumina MethylationEPIC beadchip array. A subset of the complete dataset has been uploaded in the package for testing purpose. The complete dataset is available on GitHub.
Usage
data(legacy.data)
Format
A data frame with 5,080 rows and 6 columns.
IlmnID: The unique identifier from the Illumina CG database, i.e. the probe ID.
Genome_Build: The genome build referenced by the Infinium MethylationEPIC manifest.
CHR: The chromosome containing the CpG (Genome_Build = 37).
MAPINFO: The chromosomal coordinates of the CpG sites.
UCSC_RefGene_Name: The target gene name(s), from the UCSC database. Note: multiple listings of the same gene name indicate splice variants.
UCSC_CpG_Islands_Name: The chromosomal coordinates of the CpG Island from UCSC.