ex_alt_hom {bbmix} | R Documentation |
Exclude fSNPs with no alternative allele in any sample. Also exclude fSNPs if all samples are hom.
Description
Exclude fSNPs with no alternative allele in any sample. Also exclude fSNPs if all samples are hom.
Usage
ex_alt_hom(gt_f, out)
Arguments
gt_f |
character vector with file names with genotype calls per sample |
out |
file name to save output |
Value
save file
Examples
gt_f <- system.file("extdata/output", "gt.NA12878.chr22.txt",
package = "bbmix",
mustWork = TRUE)
out <- tempfile()
## Running function
ex_alt_hom(gt_f, out)
unlink(out)
[Package bbmix version 1.0.0 Index]