plot_pep_graph {basket} | R Documentation |

## Plot a Network Graph of the PEP Matrix

### Description

Plot a Network Graph of the PEP Matrix

### Usage

```
plot_pep_graph(
x,
color_by = c("post_prob", "mean_est", "median_est"),
layout = c("fr", "nicely", "kk", "drl"),
pep_cutoff = 0
)
```

### Arguments

`x` |
the exchangeability model. |

`color_by` |
which variable to color by. One of "post_prob", "mean_est", "median_est". |

`layout` |
the layout algorithm to use for the graph. One of |

`pep_cutoff` |
a value between 0 and 1 indicating the cutoff for PEP above which edges of the graph will be drawn. |

### Examples

```
# Create an MEM analysis of the Vemurafenib trial data.
data(vemu_wide)
mem_analysis <- mem_exact(
vemu_wide$responders,
vemu_wide$evaluable,
vemu_wide$baskets
)
plot_pep_graph(mem_analysis)
```

[Package

*basket*version 0.10.11 Index]