write.rna_to_dna {baseq} | R Documentation |
Convert RNA file to DNA file
Description
This function reads a multi FASTA file containing RNA sequences, converts each RNA sequence to DNA sequence, and writes the DNA sequences to a new multi FASTA file. The output file name is generated from the input file name with the suffix '_rna.fasta'.
Usage
write.rna_to_dna(input_file, output_dir = "")
Arguments
input_file |
The name of the input multi FASTA file. |
output_dir |
The directory where the output file will be saved. If not given, the output file will be saved in the same directory as the input file. |
Value
A character string specifying the path to the output FASTA file.
Examples
#sample_file_path <- system.file("extdata", "sample3_fa.fasta", package = "baseq")
#tempdir <- tempdir()
#temp_file_path <- file.path(tempdir, basename(sample_file_path))
#file.copy(sample_file_path, temp_file_path, overwrite = TRUE)
#write.rna_to_dna(temp_file_path, output_dir = tempdir)
# Write to working directory
# write.rna_to_dna(file_path)
# Write to custom directory
# write.rna_to_dna(file_path, output_dir = "/path/to/directory/")
[Package baseq version 0.1.4 Index]