barplotGO {autoGO}

barplotGO

Description

The function barplotGO.R implement the barplot of the first 15 enrichment terms.

For each enrichment result table a barplot is produced. Results are stored in the "enrichment_plots" subfolder for each comparison.

Usage

barplotGO(
  enrich_tables,
  title = NULL,
  outfolder = NULL,
  outfile = "barplotGO.png",
  from_autoGO = TRUE
)

Arguments

enrich_tables

Dataframe containing the enrichment results or a path to your .tsv file containing the enrichment results. Columns 'Term' and 'Adjusted.P.Value' are required.

title

Default to NULL, only specify if from_autoGO is FALSE. When enrich_tables is not from autoGO and thus from read_enrich_tables, the user can specify title and subtitle of the plot as 2-element character vector, for example: c("This is the title", "this is the subtitle")

outfolder

Default to NULL, only specify if from_autoGO is FALSE. The name to assign to the folder for output saving.

outfile

Default to "barplotGO.png", is ignored if from_autoGO is TRUE. The name of the barplot filename.

from_autoGO

Default is TRUE, set to FALSE if the enrichment tables you want to use are not from a differential expression analysis.

Value

No return value. Files will be produced as part of normal execution.

Examples

## Not run: 
barplotGO(
  enrich_tables = enrich_tables,
  title = NULL,
  outfolder = NULL,
  outfile = NULL,
  from_autoGO = TRUE
)

## End(Not run)