plot.Subsampled_Permuted_Network_Metrics {aniSNA} | R Documentation |
To plot sub-sampling results of the original network and permuted networks
Description
To plot sub-sampling results of the original network and permuted networks
Usage
## S3 method for class 'Subsampled_Permuted_Network_Metrics'
plot(
x,
network,
n_simulations = 100,
subsampling_proportion = c(0.1, 0.3, 0.5, 0.7, 0.9),
network_metrics_functions_list = c(edge_density = function(x) igraph::edge_density(x),
diameter = function(x) igraph::diameter(x, weights = NA), transitivity = function(x)
igraph::transitivity(x)),
...
)
Arguments
x |
A list of matrices obtained from subsampled_permuted_network_metrics function of class "Subsampled_Permuted_Network_Metrics" |
network |
An igraph graph object consisting of observed network |
n_simulations |
For subsampling results of original network, this determines the number of sub-samples to be obtained at each level |
subsampling_proportion |
A vector depicting the levels (in proportion) at which subsamples to be taken. This parameter should be the same as the subsampling_proportion parameter passed for the function subsampled_permuted_network_metrics to obtain x. |
network_metrics_functions_list |
This is the same argument that is passed for obtaining the results from the function subsampled_permuted_network_metrics. A list consisting of function definitions of the network metrics that the user wants to evaluate. Each element in the list should have an assigned name. Default = c("edge_density" = function(x) igraph::edge_density(x), "diameter" = function(x) igraph::diameter(x, weights = NA), "transitivity" = function(x) igraph::transitivity(x)) |
... |
Further arguments are ignored |
Value
No return value, called for side effects. The boxplots show side-by-side comparison of network metrics distribution from subsamples of observed network and subsamples from permuted networks.
Examples
data(elk_2010_permutations, elk_network_2010)
elk_subsamples_permuted_networks <- subsampled_permuted_network_metrics(elk_2010_permutations)
plot(elk_subsamples_permuted_networks, elk_network_2010)