ExampleData {airr}

Example AIRR data

Description

Example data files compliant with the the AIRR Data Representation standards.

Format

• extdata/rearrangement-example.tsv.gz: Rearrangement TSV file.

• extdata/repertoire-example.yaml: Repertoire YAML file.

• extdata/germline-example.json: GermlineSet and GenotypeSet JSON file.

Examples

# Load Rearrangement example
file <- system.file("extdata", "rearrangement-example.tsv.gz", package="airr")
rearrangement <- read_rearrangement(file)

# Load Repertoire example
file <- system.file("extdata", "repertoire-example.yaml", package="airr")
repertoire <- read_airr(file)

# Load GermlineSet and GenotypeSet examples
file <- system.file("extdata", "germline-example.json", package="airr")
germline <- read_airr(file)