hcut {agricolae} | R Documentation |
Cut tree of consensus
Description
It shows dendrogram of a consensus of a tree generated by hclust.
Usage
hcut(consensus,h,group,col.text="blue",cex.text=1,...)
Arguments
consensus |
object consensus |
h |
numeric scalar or vector with heights where the tree should be cut. |
group |
an integer scalar with the desired number of group |
col.text |
color of number consensus |
cex.text |
size of number consensus |
... |
Other parameters of the function plot() in cut() |
Value
hcut Returns a data frame with group memberships and consensus tree.
Author(s)
F. de Mendiburu
See Also
Examples
library(agricolae)
data(pamCIP)
# only code
rownames(pamCIP)<-substr(rownames(pamCIP),1,6)
# groups of clusters
# output<-consensus(pamCIP,nboot=100)
# hcut(output,h=0.4,group=5,main="Group 5")
#
# hcut(output,h=0.4,group=8,type="t",edgePar=list(lty=1:2,col=2:1),main="group 8"
# ,col.text="blue",cex.text=1)
[Package agricolae version 1.3-7 Index]