| countMat {ZetaSuite} | R Documentation |
Subsampled data from in-house HTS2 screening for global splicing regulators.
Description
A data frame with 1609 individual screened genes and 100 functional readouts. The data was generated from a siRNA screen for global splicing regulators. In this screen, we interrogated ~400 endogenous alternative splicing (AS) events by using an oligo ligation-based strategy to quantify 18,480 pools of siRNAs against annotated protein-coding genes in the human genome.
Usage
data("countMat")Format
A data frame with 1609 observations on the following 100 variables
A data frame with 1609 observations on the following 100 maker variables.Each row represents gene with specific knocking-down siRNA pool, each column is an AS event. The values in the matrix are the processed foldchange values between included exons and skipping exons read counts.
Details
This data frame is the raw output data from large-scale screening.
Examples
data(countMat)