probPTreeGivenTTreeR {TransPhylo}

Calculate the probability of a phylogenetic tree given a transmission tree

Description

Calculate the probability of a phylogenetic tree given a transmission tree

Usage

probPTreeGivenTTreeR(ctree, neg, w = NULL)

Arguments

ctree

Combined phylogenetic/transmission tree

neg

Within-host coalescent rate

w

Vector of hosts for which to calculate the probability, or NULL for all

Value

Probability of phylogeny given transmission tree