consTTree {TransPhylo}

Build a consensus transmission tree from a MCMC output

Description

Build a consensus transmission tree from a MCMC output

Usage

consTTree(record, burnin = 0.5, minimum = 0.2, debug = F)

Arguments

record

Output from inferTTree function

burnin

Proportion of the MCMC output to be discarded as burnin

minimum

Minimum probability for inclusion of a partition in the consensus

debug

Used for debugging

Value

The consensus transmission tree