computeMatTDist {TransPhylo}

Build a matrix indicating for each pairs of individuals how many intermediates there are in the transmission chain

Description

Build a matrix indicating for each pairs of individuals how many intermediates there are in the transmission chain

Usage

computeMatTDist(record, burnin = 0.5)

Arguments

record

Output from inferTTree function

burnin

Proportion of the MCMC output to be discarded as burnin

Value

Matrix of intermediates in transmission chains between pairs of hosts