MC.ranks {TopKLists}R Documentation

MC based rank aggregation

Description

Compute aggregate ranks based on the transition matrix from the three Markov Chain algorithms.

Usage

MC.ranks(elements, trans, a, delta)

Arguments

elements

Unique elements of the union of all input lists - second element of the output list from function trans.matrix

trans

One of the three transition matrices build by function trans.matrix - 4 (5 or 6) elements of the output list from function trans.matrix

a

Tuning parameter to make sure Markov Chain with the transition matrix is ergodic; parameter value passed from MC.

delta

Convergence criterion for stationary distribution; parameter value passed from MC.

Details

Compute stationary distribution based on a Markov Chain transition matrix built with function trans.matrix.

Value

A list with 3 components:

comp1

Number of iterations to reach the stationary distribution

comp2

The stationary distribution

comp3

The rankings based on the stationary distribution

Author(s)

Shili Lin <shili@stat.osu.edu>

References

Lin, S. (2010) Space oriented rank-based data integration. Statistical Applications in Genetics and Molecular Biology 9, Article 20.

See Also

MC, trans.matrix


[Package TopKLists version 1.0.8 Index]