Tm_Wallace {TmCalculator} | R Documentation |
Calculate the melting temperature using the 'Wallace rule'
Description
The Wallace rule is often used as rule of thumb for approximate melting temperature calculations for primers with 14 to 20 nt length.
Usage
Tm_Wallace(ntseq, ambiguous = FALSE, outlist = TRUE)
Arguments
ntseq |
Sequence (5' to 3') of one strand of the DNA nucleic acid duplex as string or vector of characters (Note: Non-DNA characters are ignored by this method). |
ambiguous |
Ambiguous bases are taken into account to compute the G and C content when ambiguous is TRUE. |
outlist |
output a list of Tm and options or only Tm value, default is TRUE. |
Author(s)
Junhui Li
References
Thein S L , Lynch J R , Weatherall D J , et al. DIRECT DETECTION OF HAEMOGLOBIN E WITH SYNTHETIC OLIGONUCLEOTIDES[J]. The Lancet, 1986, 327(8472):93.
Examples
ntseq = c('acgtTGCAATGCCGTAWSDBSY') #for wallace rule
out <- Tm_Wallace(ntseq,ambiguous = TRUE)
out
out$Options
[Package TmCalculator version 1.0.3 Index]