get_case_lists {TCGAretriever} | R Documentation |
Retrieve Case List Available for a Specific Cancer Study.
Description
Each study includes one or more "case lists". Each case list is a collection of samples that were analyzed using one or more platforms/assays. It is possible to obtain a list of case list identifiers from cbioportal.org for a cancer study of interest. Identifier, name, description and category are returned for each entry.
Usage
get_case_lists(csid, dryrun = FALSE)
Arguments
csid |
String corresponding to the Identifier of the Study of Interest |
dryrun |
Logical. If TRUE, all other arguments (if any) are ignored and a representative example is returned as output. No Internet connection is required for executing the operation when 'dryrun' is TRUE. |
Value
Data Frame including Case List information.
Author(s)
Damiano Fantini, damiano.fantini@gmail.com
References
https://www.data-pulse.com/dev_site/TCGAretriever/
Examples
# Set `dryrun = FALSE` (default option) in production!
blca_case_lists <- get_case_lists("blca_tcga", dryrun = TRUE)
blca_case_lists
[Package TCGAretriever version 1.9.1 Index]