slapGT {SlaPMEG}

Run step II via globaltest package

Description

Globaltest is used to test the association between phenotype variable and estimated random effects from step I.

Usage

slapGT(EBS, data_inf, rand_nam, Ynames, grouping, Emethod)

Arguments

EBS

Estimated random effects by either joint or pairwise approach

data_inf

Dataframe with variables required for the test

rand_nam

Names of random effects defined in model

Ynames

Name of omics in pathway

grouping

Name of the covariate representing the grouping by the phenotype

Emethod

Estimation method for the random effects which is either joint or pairwise

Value

A GT object containing globaltest results

Author(s)

Mitra Ebrahimpoor

[e-mail]