inter-range-methods {Signac}

Inter-range transformations for ChromatinAssay objects

Description

The range, reduce, gaps, disjoin, isDisjoint, disjointBins methods are available for ChromatinAssay objects.

Usage

## S4 method for signature 'ChromatinAssay'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

## S4 method for signature 'Seurat'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

## S4 method for signature 'ChromatinAssay'
reduce(x, drop.empty.ranges = FALSE, ...)

## S4 method for signature 'Seurat'
reduce(x, drop.empty.ranges = FALSE, ...)

## S4 method for signature 'ChromatinAssay'
gaps(x, start = NA, end = NA)

## S4 method for signature 'Seurat'
gaps(x, start = NA, end = NA)

## S4 method for signature 'ChromatinAssay'
disjoin(x, ...)

## S4 method for signature 'Seurat'
disjoin(x, ...)

## S4 method for signature 'ChromatinAssay'
isDisjoint(x, ...)

## S4 method for signature 'Seurat'
isDisjoint(x, ...)

## S4 method for signature 'ChromatinAssay'
disjointBins(x, ...)

## S4 method for signature 'Seurat'
disjointBins(x, ...)

Arguments

x

A ChromatinAssay object

...

Additional arguments

with.revmap

See inter-range-methods in the IRanges packages

na.rm

Ignored

drop.empty.ranges

See ?IRanges{inter-range-methods}

start, end

See ?IRanges{inter-range-methods}

Functions

• range(Seurat): method for Seurat objects

• reduce(ChromatinAssay): method for ChromatinAssay objects

• reduce(Seurat): method for Seurat objects

• gaps(ChromatinAssay): method for ChromatinAssay objects

• gaps(Seurat): method for Seurat objects

• disjoin(ChromatinAssay): method for ChromatinAssay objects

• disjoin(Seurat): method for Seurat objects

• isDisjoint(ChromatinAssay): method for ChromatinAssay objects

• isDisjoint(Seurat): method for Seurat objects

• disjointBins(ChromatinAssay): method for ChromatinAssay objects

• disjointBins(Seurat): method for Seurat objects

See Also

• inter-range-methods in the IRanges package.

• inter-range-methods in the GenomicRanges package

• ChromatinAssay-class