VariantPlot {Signac}

Plot strand concordance vs. VMR

Description

Plot the Pearson correlation between allele frequencies on each strand versus the log10 mean-variance ratio for the allele.

Usage

VariantPlot(
  variants,
  min.cells = 2,
  concordance.threshold = 0.65,
  vmr.threshold = 0.01
)

Arguments

variants

A dataframe containing variant information. This should be computed using IdentifyVariants

min.cells

Minimum number of high-confidence cells detected with the variant for the variant to be displayed.

concordance.threshold

Strand concordance threshold

vmr.threshold

Mean-variance ratio threshold