DensityScatter {Signac}

Scatterplot colored by point density

Description

Create a scatterplot using variables in the object metadata and color cells by the density of points in the x-y space.

Usage

DensityScatter(object, x, y, log_x = FALSE, log_y = FALSE, quantiles = NULL)

Arguments

object

A Seurat object

x

Name of metadata variable to plot on x axis

y

Name of metadata variable to plot on y axis

log_x

log10 transform x values

log_y

log10 transform y values

quantiles

Vector of quantiles to display for x and y data distribution. Must be integer values between 0 and 100. TRUE can be passed as a shorthand way to set c(5, 10, 90, 95). If FALSE or NULL, no quantile information is displayed

Value

Returns a ggplot object