CountsInRegion {Signac}

Counts in region

Description

Count reads per cell overlapping a given set of regions

Usage

CountsInRegion(object, assay, regions, ...)

Arguments

object

A Seurat object

assay

Name of a chromatin assay in the object to use

regions

A GRanges object

...

Additional arguments passed to findOverlaps

Value

Returns a numeric vector

Examples

CountsInRegion(
  object = atac_small,
  assay = 'bins',
  regions = blacklist_hg19
)