BinarizeCounts {Signac}

Binarize counts

Description

Set counts >1 to 1 in a count matrix

Usage

BinarizeCounts(object, ...)

## Default S3 method:
BinarizeCounts(object, assay = NULL, verbose = TRUE, ...)

## S3 method for class 'Assay'
BinarizeCounts(object, assay = NULL, verbose = TRUE, ...)

## S3 method for class 'Seurat'
BinarizeCounts(object, assay = NULL, verbose = TRUE, ...)

Arguments

object

A Seurat object

...

Arguments passed to other methods

assay

Name of assay to use. Can be a list of assays, and binarization will be applied to each.

verbose

Display messages

Value

Returns a Seurat object

Examples

x <- matrix(data = sample(0:3, size = 25, replace = TRUE), ncol = 5)
BinarizeCounts(x)
BinarizeCounts(atac_small[['peaks']])
BinarizeCounts(atac_small)