AccessiblePeaks {Signac}

Accessible peaks

Description

Find accessible peaks in a set of cells

Usage

AccessiblePeaks(
  object,
  assay = NULL,
  idents = NULL,
  cells = NULL,
  min.cells = 10
)

Arguments

object

A Seurat object

assay

Name of assay to use

idents

A set of identity classes to find accessible peaks for

cells

A vector of cells to find accessible peaks for

min.cells

Minimum number of cells with the peak accessible (>0 counts) for the peak to be called accessible

Value

Returns a vector of peak names