rewritetuple {SeqFeatR} | R Documentation |
Rewrite result from SeqFeatRs assoctuple
Description
Function to reqrite output from SeqFeatRs assoctuple into an usable form for SeqFeatRs tartan.
Usage
rewritetuple(path_to_file_assoctuple_csv_result = NULL, save_name_csv,
first_position, second_position, value_position, separator, threshold)
Arguments
path_to_file_assoctuple_csv_result |
csv file with results from SeqFeatRs assoctuple function. For reference see example file. |
save_name_csv |
name of file to which results are saved in csv format. |
first_position |
column position of first sequence position. |
second_position |
column position of second sequence position. |
value_position |
column position of p-value. |
separator |
separator of csv input file (usually ";", ",", "\t"). |
threshold |
p-value threshold, below which data is to be included in result. |
Details
Extracts the two sequence positions and p-value if it is below the threshold and generates output csv file for SeqFeatRs tartan with these values.
Author(s)
Bettina Budeus
See Also
Examples
#Input file
assoctuple_result <- system.file("extdata", "assoctuple_result.csv", package="SeqFeatR")
#Usage
rewritetuple(
path_to_file_assoctuple_csv_result=assoctuple_result,
save_name_csv="rewritetuple_result.csv",
first_position=3,
second_position=4,
value_position=10,
separator="\t",
threshold=0.1)
[Package SeqFeatR version 0.3.1 Index]