identifyNoise,stringCoverageList-method {STRMPS}

Idenfities the noise.

Description

identifyNoise takes an stringCoverageList-object and identifies the noise based on a signal threshold for every marker in the provided list.

Usage

## S4 method for signature 'stringCoverageList'
identifyNoise(stringCoverageListObject,
  colBelief = "Coverage", thresholdSignal = 0.01)

Arguments

stringCoverageListObject

an stringCoverageList-object, created using the stringCoverage-function.

colBelief

the name of the coloumn used for identification.

thresholdSignal

threshold applied to the signal (generally the coverage) of every string.

Value

Returns a list, with an element for every marker in stringCoverageList-object, each element contains the genotype for a given marker.

Examples

# Strings aggregated by 'stringCoverage()'
data("stringCoverageList")

identifyNoise(stringCoverageList, thresholdSignal = 0.03)