findStutter,stringCoverageGenotypeList-method {STRMPS}

Find stutters

Description

Given identified alleles it search for '-1' stutters of the alleles.

Usage

  ## S4 method for signature 'stringCoverageGenotypeList'
findStutter(stringCoverageGenotypeListObject,
  trace = FALSE)

Arguments

stringCoverageGenotypeListObject

A stringCoverageGenotypeList-class object.

trace

Should a trace be shown?

Value

A 'neighbourList' with the stutter strings for the identified allele regions.

Examples

# The object returned by merging a stringCoverageList-Object
# and a genotypeList-Object.
data("stringCoverageGenotypeList")

stutterList <- findStutter(stringCoverageGenotypeList)
stutterTibble <- subset(do.call("rbind", stutterList), !is.na(Genotype))

stutterTibble$BlockLengthMissingMotif
stutterTibble$NeighbourRatio