findNeighbours,stringCoverageGenotypeList-method {STRMPS}

Find neighbours

Description

Generic function for finding neighbouring strings, given identified alleles.

Usage

  ## S4 method for signature 'stringCoverageGenotypeList'
findNeighbours(stringCoverageGenotypeListObject,
  searchDirection = -1, trace = FALSE)

Arguments

stringCoverageGenotypeListObject

A stringCoverageGenotypeList-class object.

searchDirection

The direction to search for neighbouring strings. Default is -1, indicating a search for '-1' stutters.

trace

Should a trace be shown?

Value

A 'neighbourList' with the neighbouring strings, in the specified direction, for the identified allele regions.