BLAASD {SSHAARP} | R Documentation |
BLAASD - Build Loci Amino Acid Specific Dataframe
Description
Extracts alignment sequence information for a given locus from the ANHIG/IMGTHLA GitHub repository to produce a dataframe of individual amino acid data for each amino acid position for all alleles, for a user-defined HLA locus or loci. The first 4 columns are locus, allele, trimmed allele, and allele_name.
Usage
BLAASD(loci)
Arguments
loci |
A vector of un-prefixed HLA locus names |
Value
A list object of data frames for each specified locus. Each list element is a data frame of allele names and the corresponding peptide sequence for each amino acid position. An error message is return if the loci input is not a locus for which petpide alignments are available in the ANHIG/IMGTHLA Github Repository.
Examples
#BLAASD with one locus as input
BLAASD("C")
#BLAASD with multiple loci as input
BLAASD(c("A", "B", "C"))
[Package SSHAARP version 1.1.0 Index]