intervals {SNPassoc} | R Documentation |
Print ORs and 95% confidence intervals for an object of class 'haplo.glm'
Description
Print ORs and confidence intervals for an object of class 'haplo.glm'
Usage
intervals(o, level=.95, ...)
Arguments
o |
object of class 'haplo.glm' |
level |
significance level. Default is 95 percent |
... |
other arguments |
Value
intervals object with ORs and 95% confidence intervals for an object of class 'haplo.glm'
Examples
# Not Run
library(SNPassoc)
library(haplo.stats)
data(asthma, package = "SNPassoc")
asthma.s <- setupSNP(data=asthma, colSNPs=7:ncol(asthma), sep="")
trait <- asthma.s$casecontrol
snpsH <- c("rs714588", "rs1023555", "rs898070")
genoH <- make.geno(asthma.s, snpsH)
mod <- haplo.stats:: haplo.glm( trait ~ genoH,
family="binomial",
locus.label=snpsH,
allele.lev=attributes(genoH)$unique.alleles,
control = haplo.glm.control(haplo.freq.min=0.05))
intervals(mod)
summary(mod)
[Package SNPassoc version 2.1-0 Index]