qSIP_atom_excess_format_MAGs {SIPmg}

Reformat a phyloseq object of qSIP_atom_excess_MAGs analysis

Description

Reformat a phyloseq object of qSIP_atom_excess_MAGs analysis

Usage

qSIP_atom_excess_format_MAGs(physeq, control_expr, treatment_rep)

Arguments

physeq

A phyloseq object

control_expr

An expression for identifying unlabeled control samples in the phyloseq object (eg., "Substrate=='12C-Con'")

treatment_rep

Which column in the phyloseq sample data designates replicate treatments

Value

numeric value: atom fraction excess (A)