phylo.table {SIPmg} | R Documentation |
Master phyloseq object using the MAG phyloseq objects
Description
Creates a phyloseq-style object using processed phyloseq objects for otu table (here, MAG table), taxa table, and sample table
Usage
phylo.table(mag, taxa, samples)
Arguments
mag |
phyloseq-styled MAG table |
taxa |
phyloseq-styled taxa table |
samples |
sample information table |
Value
phyloseq object for MAGs
Examples
data(mag.table,taxonomy.object,samples.object,fractions,taxonomy_tibble)
###Making phyloseq table from fractions metadata
samples.object = sample.table(fractions)
taxonomy.object = tax.table(taxonomy_tibble)
### Making master phyloseq table from scaled MAG data, taxa and fractions phyloseq data
phylo.qSIP = phylo.table(mag.table,taxonomy.object,samples.object)
[Package SIPmg version 1.4.1 Index]