gsea_sumplot {SCdeconR}

Summary plot of gene set enrichment analysis

Description

Summary plot of selected up/down regulated gene-sets for gene set enrichment analysis.

Usage

gsea_sumplot(
  gseares_path,
  pos_sel,
  neg_sel,
  pvalflag = TRUE,
  interactive = FALSE
)

Arguments

gseares_path

path to GSEA output.

pos_sel

a character vector of upregulated gene-set names.

neg_sel

a character vector of downregulated gene-set names.

pvalflag

a logical value indicating whether to use adjusted p value in the plot. Default to TRUE.

interactive

a logical value indicating whether to generate an interactive plot. Default to FALSE.

Details

this function does not support output from GSEA R implementation

Value

a ggplot object or plotly object if interactive is set to TRUE