gsea_rwplot {SCdeconR}

GSEA random-walk plot

Description

Generate high-quality GSEA random-walk figures.

Usage

gsea_rwplot(gseares_path, gsname, class_name, metric_range = NULL)

Arguments

gseares_path

path to GSEA output.

gsname

a character value indicating the gene-set name to generate random-walk plot.

class_name

a character value indicating the class of the gene-set, e.g. "GO".

metric_range

optional range of the ranking metric.

Details

this function does not support output from GSEA R implementation. Scripts initially implemented by Thomas Kuilman.

Value

a random-walk plot for selected gene-set