gtf_to_gff3 {Rgff} | R Documentation |
Converts a GTF file into a GFF3 file
Description
This function converts a GTF file into a GFF3 file mantaining the feature hierarchy defined by the gene_id and transcript_id attributes. The remaining attributes of each feature will be kept with the same name and value.
Usage
gtf_to_gff3(gtfFile, outFile, forceOverwrite = FALSE)
Arguments
gtfFile |
Path to the input GTF file |
outFile |
Path to the output GFF3 file, inf not provided the output will be gtfFile.gff3 |
forceOverwrite |
If output file exists, overwrite the existing file. (default FALSE) |
Value
Path to the generated GFF3 file
Examples
## Not run:
test_gtf<-system.file("extdata", "AthSmall.gtf", package="Rgff")
gtf_to_gff3(test_gtf)
## End(Not run)
[Package Rgff version 0.1.6 Index]