| Orthogonal matching pursuit variable selection {Rfast2} | R Documentation |
Orthogonal matching variable selection
Description
Orthogonal matching variable selection.
Usage
omp2(y, x, xstand = TRUE, tol = qchisq(0.95, 1), type = "gamma" )
Arguments
y |
The response variable, a numeric vector. For "omp" this can be either a vector with discrete (count) data, 0 and 1, non negative values, strictly positive or a factor (categorical) variable. |
x |
A matrix with the data, where the rows denote the observations and the columns are the variables. |
xstand |
If this is TRUE the independent variables are standardised. |
tol |
The tolerance value to terminate the algorithm. This is the change in the criterion value
between two successive steps. For "ompr" the default value is 2 because the default method
is "BIC". The default value is the 95% quantile of the |
type |
This denotes the parametric model to be used each time. It depends upon the nature of y. The possible values are "gamma", "negbin", or "multinomial". |
Details
This is the continuation of the "omp" function of the Rfast. We added some more regression models. The "gamma" and the "multinomial" models have now been implemented in C++.
Value
A list including:
runtime |
The runtime of the algorithm. |
info |
A matrix with two columns. The selected variable(s) and the criterion value at every step. |
Author(s)
Michail Tsagris.
R implementation and documentation: Michail Tsagris mtsagris@uoc.gr.
References
Pati Y. C., Rezaiifar R. and Krishnaprasad P. S. (1993). Orthogonal matching pursuit: Recursive function approximation with applications to wavelet decomposition. In Signals, Systems and Computers. 1993 Conference Record of The Twenty-Seventh Asilomar Conference on. IEEE.
Mazin Abdulrasool Hameed (2012). Comparative analysis of orthogonal matching pursuit and least angle regression. MSc thesis, Michigan State University. https://www.google.gr/url?sa=t&rct=j&q=&esrc=s&source=web&cd=1&ved=0ahUKEwik9P3Yto7XAhUiCZoKHQ8XDr8QFgglMAA&url=https
Lozano A., Swirszcz G. and Abe N. (2011). Group orthogonal matching pursuit for logistic regression. In Proceedings of the Fourteenth International Conference on Artificial Intelligence and Statistics.
The \gamma-OMP algorithm for feature selection with application to gene expression data.
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19(2): 1214-1224.
https://arxiv.org/pdf/2004.00281.pdf
See Also
Examples
x <- matrix( rnorm(100 * 50), ncol = 50 )
y <- rgamma(100, 4, 1)
a <- omp2(y, x)
a
x <- NULL