GnomADgenes {Ravages}

GnomADgenes dataset

Description

This dataframe contains variants from the GnomAD database with MAF values in the Non-Finnish European (NFE) and their consequences from VEP with each associated gene in build version 37.

Usage

data(GnomADgenes)

Format

GnomADgenes is a dataframe with five columns:

chr

The chromosome of the variant

pos

The position of the variant

consequence

The functionnal consequence of the variant predicted by Variant Effect Predictor (VEP)

gene

The gene associated to each variant predicted by VEP

maf

The MAF of the variant in the NFE population

Source

The data were obtained from the GnomAD website (see http://gnomad.broadinstitute.org/) and the VEP website (see https://www.ensembl.org/info/docs/tools/vep/).