violinMarkerPlot {RaceID}

Violin plot of marker gene expression or noise

Description

Displaying violin plots of gene expression or gene expression noise (epsilon) across (a set of) clusters

Usage

violinMarkerPlot(g, object, noise = NULL, set = NULL, ti = NULL)

Arguments

g

Valid gene ID corresponding to a (set of) rownames of object@ndata or noise.

object

RaceID SCseq object.

noise

List of noise parameters returned by compTBNoise. If this argument is given, then the distribution of noise (epsilon) is plotted. Default is NULL and normalized gene expression (normalized by median count across all clusters in set) is plotted.

set

Postive integer number or vector of integers corresponding to valid cluster numbers. Violin plots are shown for all clusters in set. Default is NULL and data are shown for all clusters in object@cpart.

ti

String of characters representing the title of the plot. Default is NULL and the first element of g is chosen.

Value

None