plotspantree {RaceID}

Minimum Spanning Tree of RaceID3 clusters

Description

This function plots a minimum spanning tree of the RaceID3 cluster medoids in a two-dimensional reduction representation.

Usage

plotspantree(object, tp = 0.5, cex = 1, projections = FALSE)

Arguments

object

Ltree class object.

tp

Real number between zero and one. Level of transparency of the t-SNE map. Deafault is 0.5.

cex

real positive number. Size of data points. Deault is 1.

projections

logical. If TRUE, then the projections of the cells onto the inter-medoid links as computed by StemID are shown. Default is FALSE

Value

None.