plotQQ {RaceID}

Scatter plot of two noise-related quantaties of local pruned k-nearest neighbourhoods

Description

Displaying two noise-related quantaties of local pruned k-nearest neighbourhoods in a scatterplot highlighting VarID clusters.

Usage

plotQQ(x, m, n, object, cluster = NULL, cex = 0.5, show.cor = TRUE, ...)

Arguments

x

List object returned by quantKnn function.

m

Component name of x. One of "noise.av", "noise.ratio", "local.corr", "umi".

n

Component name of x. One of "noise.av", "noise.ratio", "local.corr", "umi".

object

SCseq class object.

cluster

Valid cluster number or vector of cluster numbers, contained in object@cpart. If given, then cells of clusters in cluster are circled in black.

cex

Real positive number. Size of data points. Default is 0.5.

show.cor

logical. If TRUE then Pearson's correlation is shown in the legend. Default is TRUE.

...

Additional parameters of plot (e.g., log, see help(plot)).

Value

None