plotPT {RaceID}

Plotting pseudo-time in dimensional reduction representation

Description

Highlight clusters or pseudotime in dimensional reduction representation and indicate trajectory derived by slingshot.

Usage

plotPT(pt, object, clusters = TRUE, lineages = FALSE)

Arguments

pt

List object returned by function pseudoTime.

object

RaceID SCseq object.

clusters

logical. If TRUE, then clusters are highlighted. Otherwise, pseudotime is highlighted. Default is TRUE.

lineages

logical. If TRUE, then lineages as linear connections of clusters are hghlighted. Otherwise, continuous trajectories are shown. Default is FALSE.

Value

None