getFilteredCounts {RaceID}

Function for filtering count data

Description

This function discards lowly expressed genes from a count matrix stored in an SCseq object.

Usage

getFilteredCounts(object, minnumber = 5, minexpr = 5)

Arguments

object

SCseq class object.

minnumber

Integer number greater or equal to zero. Minimum number of cells required to have at least minexpr transcript counts for a gene to not be discarded. Default is 5.

minexpr

Integer number greater or equal to zero. Minimum expression of a gene in at least minnumber cells to not be discarded. Default is 5.

Value

Filtered expression matrix.