extractCounts {RaceID} | R Documentation |
Function for filtering count data
Description
This function discards lowly expressed genes from a count matrix stored in an SCseq
object, and returns (normalized or non-normalized) gene expression or noise values.
Usage
extractCounts(
object,
minexpr = 5,
minnumber = 5,
noise = FALSE,
pt = NULL,
n = NULL,
g = NULL,
norm = TRUE
)
Arguments
object |
|
minexpr |
Integer number greater or equal to zero. Minimum expression of a gene in at least |
minnumber |
Integer number greater or equal to zero. Minimum number of cells required to have at least |
noise |
logical. If |
pt |
List object returned by function |
n |
Vector of valid column names corresponding to a subset of valid column names of the |
g |
Vector of gene IDs (valid row names of |
norm |
logical. If |
Value
Filtered expression matrix.