comppvalue {RaceID} | R Documentation |
Computing P-values for Link Significance
Description
This function computes a p-value for the significance (i.e. over-representation of assigned cells) of each inter-cluster link.
Usage
comppvalue(object, pthr = 0.01, sensitive = FALSE)
Arguments
object |
|
pthr |
p-value cutoff for link significance. This threshold is applied for the calculation of link scores reflecting how uniformly a link is occupied by cells. |
sensitive |
logical. Only relevant when |
Value
An Ltree class object with link p-value and occupancy data stored in slot cdata
.
Examples
sc <- SCseq(intestinalDataSmall)
sc <- filterdata(sc)
sc <- compdist(sc)
sc <- clustexp(sc)
sc <- findoutliers(sc)
sc <- comptsne(sc)
ltr <- Ltree(sc)
ltr <- compentropy(ltr)
ltr <- projcells(ltr)
ltr <- lineagegraph(ltr)
ltr <- comppvalue(ltr)
[Package RaceID version 0.3.5 Index]