getAssemblyFromFasta {RJSplot}

Create an assembly from a FASTA file for its use as parameter of genomemap_rjs or manhattan_rjs.

Description

getAssemblyFromFasta create assemblies from a FASTA file for their use as parameter of genomemap_rjs or manhattan_rjs.

Usage

getAssemblyFromFasta(fasta)

Arguments

fasta

a "character" string representing the input Fasta file to be added in the genome browser.

Value

a data frame in BED format ready to use as an assembly in genomemap_rjs or manhattan_rjs.

Note

FASTA format is a text-based format for representing either nucleotide sequences or peptide sequences, in which nucleotides or amino acids are represented using single-letter codes.

Author(s)

David Barrios and Carlos Prieto. Bioinformatics Service of Nucleus, University of Salamanca. See https://bioinfo.usal.es/

See Also

The ‘RJSplot’ Website: https://rjsplot.usal.es

genomemap_rjs.

manhattan_rjs.

Examples

## Live examples and full tutorial on https://rjsplot.usal.es