createAssembly {RJSplot}

Creates a genome assembly for genomemap_rjs or manhattan_rjs.

Description

createAssembly create assemblies for their use as parameter of genomemap_rjs or manhattan_rjs.

Usage

createAssembly(name, size)

Arguments

name

a vector with the chomosome or scaffold names.

size

a vector with the chomosome or scaffold sizes.

Value

a data frame in BED format to be used as an assembly in genomemap_rjs or manhattan_rjs.

Author(s)

David Barrios and Carlos Prieto. Bioinformatics Service of Nucleus, University of Salamanca. See https://bioinfo.usal.es/

See Also

The ‘RJSplot’ Website: https://rjsplot.usal.es

genomemap_rjs.

manhattan_rjs.

Examples

## Creates a fake genome assembly for its posterior use as parameter of genomemap or manhattan plot
## Live examples and full tutorial on https://rjsplot.usal.es

## Generate a test assembly with three scaffolds
assembly <- createAssembly(c("scaffold1","scaffold2","scaffold3"), c(1000000,800000,650000))