read_plt {R2admb}

Read in ADMB profile file

Description

Read in the output from ADMB likelihood profiling stored in a .plt file

Usage

read_plt(varname)

Arguments

varname

(character) Name of profiled variable (base name of .plot file)

Value

List containing the following elements:

prof

likelihood profile: a two-column matrix containing the parameter value and the corresponding likelihood (not the log-likelihood or negative log-likelihood), scaled to integrate to 1.0

ci

matrix of upper and lower confidence intervals at the 0.9, 0.95, and 0.975 levels

prof_norm

likelihood profile, based on a normal approximation

cinorm

confidence interval matrix, based on normal approximation