impute.incid {R0} | R Documentation |
Impute censored cases to rebuild longer epidemic vector
Description
When first records of incidence are unavailable, tries to impute censored cases to rebuild a longer epidemic vector.
Usage
impute.incid(CD.optim.vect, CD.epid, CD.R0, CD.GT)
Arguments
CD.optim.vect |
Vector of two elements ( |
CD.epid |
Original epidemic vector, output of |
CD.R0 |
Assumed R0 value for the original epidemic vector. |
CD.GT |
Generation time distribution to be used for computations. |
Details
This function is not intended for stand-alone use. It optimizes the values
of vect, based upon minimization of deviation between actual epidemics data
and observed generation time. The optimized function is censored.deviation()
,
which returns the deviation used for minimization. Stand-alone use can be
conducted, however this assumes data are all of the correct format.
Value
A vector with both imputed incidence and source available data.
Author(s)
Pierre-Yves Boelle, Thomas Obadia